Product Class: Other

NudC Pyrophosphatase
neb31 cloned at NEB recombinant 37 65 Heat

We are excited to announce that all reaction buffers are now BSA-free. NEB began switching our BSA-containing reaction buffers in April 2021 to buffers containing Recombinant Albumin (rAlbumin) for restriction enzymes and some DNA modifying enzymes. Find more details at www.neb.com/BSA-free.


Catalog #M0607

Product Introduction

  • Decaps RNA that contains ADP-containing, non-canonical initiating nucleotides (including NAD+/NADH caps), resulting in ligatible monophosphate at the 5′ end.
  • Hydrolyzes NADH and NAD+ into AMP and reduced nicotinamide monophosphate nucleoside (NMNH), and AMP and nicotinamide monophosphate nucleoside (NMN+), respectively.
  • Hydrolyzes diphosphate dinucleotides and metabolic co-factors containing an ADP moiety such as AppA, FAD, Coenzyme A, etc.
  • Useful for NAD+ decapping or deNADding when NAD+ is the 5′ initiating nucleotide of RNA.
  • Useful for detection and identification of RNA containing non-canonical initiating nucleotides using ligation-based methods such as 5′ RACE and RNA-seq.

This is an Enzyme for Innovation (EFI). EFI is a project initiated by NEB to provide unique enzymes to the scientific community in the hopes of enabling the discovery of new and innovative applications. These enzymes have interesting properties and unique specificities.

 

Product Information

Description

NudC is a NUDIX pyrophosphatase that efficiently hydrolyzes NAD+- and NADH-capped RNA, generating a ligatible 5′ monophosphate on the RNA (NAD+ decapping or deNADding) (1). Deletion of the nudC gene has been shown to increase the fraction of NAD+-capped RNA in E. coli (2).

NudC has also been shown to hydrolyze small molecules containing an ADP moiety such as NADH, NAD+, AppA, ADP-ribose, ADP-glucose and metabolic co-factors such as FAD, Coenzyme A and Acetyl CoA at varying efficiency (3 and unpublished results). With its activity on various dinucleotides and metabolic co-factors, NudC may potentially be used to identify RNA carrying non-canonical caps by pyrophosphorolysis of the cap and analysis of the product nucleotide, or identifying the resulting 5' monophosphate end of the RNA using 5 ligation-based methods such as RNA-seq or 5’ RACE (4).



 

This product is related to the following categories:
RNA Modification

Properties & Usage

Unit Definition

1 µM of NudC hydrolyzes 200 µM or more NAD+ into NMN+ and AMP in 1X NEBuffer 3.1 and 5 mM DTT at 37°C for 30 min.

Reaction Conditions

1X NEBuffer™ r3.1
Supplement with 5 mM DTT
Incubate at 37°C

NEBuffer™ r3.1
100 mM NaCl
50 mM Tris-HCl
10 mM MgCl2
100 µg/ml Recombinant Albumin
(pH 7.9 @ 25°C)

Storage Buffer

300 mM NaCl
10 mM Tris-HCl
1 mM DTT
0.1 mM EDTA
50% Glycerol
pH 7.9 @ 25°C

Heat Inactivation

65°C for 10 minutes

References

  1. Frick D.N. and Bessman M.J. (1995).  J. Biol. Chem. 270, 1529-1534.
  2. Cahová, H. et al. (2015). Nature. 519, 374-377.
  3. Höfer K. et al. (2016). Nat Chem Biol. 12, 730-734.
  4. Vvedenskaya I.O., et al (2018). Mol Cell. 70, 553-564.e9.

Protocols, Manuals & Usage

Protocols

  1. Protocol for using NudC in decapping RNA containing non-canonical initiating nucleotides (NEB #M0607)

FAQs & Troubleshooting

FAQs

  1. Does NudC (NEB #M0607) decap other cap structures?
  2. Does NudC decap canonical G-capped RNA?
  3. Is it possible to use NudC to generate ligatible 5′ monophosphate RNA from non-canonical initiating nucleotides only?
  4. Is NudC decapping activity affected by the structure of the RNA?
  5. What are Enzymes for Innovation?
  6. Can you tell me more about the switch from BSA to Recombinant Albumin (rAlbumin) in NEBuffers?

Quality, Safety & Legal

Quality Assurance Statement

Quality Control tests are performed on each new lot of NEB product to meet the specifications designated for it. Specifications and individual lot data from the tests that are performed for this particular product can be found and downloaded on the Product Specification Sheet, Certificate of Analysis, data card or product manual. Further information regarding NEB product quality can be found here.

Specifications

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Certificate Of Analysis

The Certificate of Analysis (COA) is a signed document that includes the storage temperature, expiration date and quality controls for an individual lot. The following file naming structure is used to name these document files: [Product Number]_[Size]_[Version]_[Lot Number]

Safety DataSheets

The following is a list of Safety Data Sheet (SDS) that apply to this product to help you use it safely.

Legal and Disclaimers

Products and content are covered by one or more patents, trademarks and/or copyrights owned or controlled by New England Biolabs, Inc (NEB). The use of trademark symbols does not necessarily indicate that the name is trademarked in the country where it is being read; it indicates where the content was originally developed. The use of this product may require the buyer to obtain additional third-party intellectual property rights for certain applications. For more information, please email [email protected].

This product is intended for research purposes only. This product is not intended to be used for therapeutic or diagnostic purposes in humans or animals.

New England Biolabs (NEB) is committed to practicing ethical science – we believe it is our job as researchers to ask the important questions that when answered will help preserve our quality of life and the world that we live in. However, this research should always be done in safe and ethical manner. Learn more.